Research-Grade Shotgun Metagenomic Profiling
Upload whole-genome shotgun (WGS) metagenomic FASTQ files and receive automated, standardized taxonomic and functional profiles powered by our QC workflow, MetaPhlAn, Kraken2/Bracken, and HUMAnN pipeline.
(16S / amplicon sequencing is not currently supported)
Sequencing is only the beginning.
Getting from FASTQ files to interpretable profiles can mean pipeline setup, computational infrastructure, ongoing maintenance, and specialist support.
Routine analysis takes resources away from research.
From raw files to a clearer starting point.
FGE Analytics brings routine microbiome analysis into a focused, web-based workflow.
Upload WGS FASTQ files
Paired-end metagenomic FASTQ files only.
Configure the analysis
Choose the analysis options available in the platform.
Run the workflow
Submit your analysis through FGE Analytics.
Explore your results
Review profiles and outputs for your research.
Workflow details and available configuration options may vary by analysis.
Routine bioinformatics, without the routine overhead.
A practical analysis platform designed to support research—not replace scientific expertise.
FASTQ-to-profile workflow
Move from sequencing files toward microbiome profiles in one web-based workflow.
On-demand analysis
Access routine analysis when your research needs it.
Less pipeline setup
Reduce the need to establish and maintain a routine analysis pipeline in-house.
Lower routine workload
Give researchers and bioinformatics teams more room for higher-value work.
Research-ready outputs
Receive standardized analysis outputs to support downstream research and interpretation.
Scalable access
Options designed for individual researchers and laboratory workflows.
Spend more time on the science.
Analyze samples without first establishing and maintaining your own routine bioinformatics pipeline. Keep scientific interpretation and decisions in your hands.
Support more microbiome analysis.
Use FGE Analytics as an accessible option for repeated analysis workflows—while your team retains oversight of study design, quality, and interpretation.
Real software.
Built for analysis.
See the FGE Analytics interface and the workflow researchers use to submit and review microbiome analysis.
Explore FGE Analytics →
Choose an approach that fits your work.
Flexible options for individual samples, ongoing research, and laboratory workflows.
Starter
Pay as you go. No commitment.
- ✓ Full pipeline access
- ✓ 24–48h turnaround
Researcher
Perfect for small labs.
- ✓ 2 samples included /mo
- ✓ $49 for extra samples
- ✓ 12-month commitment
- ✓ 30-day grace period
Researcher Flex
Same benefits, no commitment.
- ✓ 2 samples included /mo
- ✓ $59 for extra samples
- ✓ Cancel anytime
Lab
For busy research facilities.
- ✓ 10 samples included /mo
- ✓ $39 for extra samples
- ✓ 12-month commitment
- ✓ 30-day grace period
Lab Flex
Same benefits, no commitment.
- ✓ 10 samples included /mo
- ✓ $49 for extra samples
- ✓ Cancel anytime
Need more? Contact us for Enterprise options.
Spend less time managing microbiome workflows.
Spend more time on your research.
Bring your FASTQ data into a focused workflow for microbiome analysis.
Start analyzing ↗